· 1. MicrobeWorld (http://www.microbeworld.org/)
· 2. S-Star.org (http://s-star.org/main.htm)
· 3. Frangeul L, Nelson KE, Buchrieser C, Danchin A, Glaser P, Kunst F. 1999. Cloning and assembly strategies in microbial genome projects. Microbiology 145:2625-2634
· 4. Kim UJ, Shizuya H, de Jong PJ, Birren B, Simon MI. 1992. Stable propagation of cosmid sized human DNA inserts in an F factor based vector. Nucleic Acids Res 20:1083-1085
· 5. Shizuya H, Birren B, Kim UJ, Mancino V, Slepak T, Tachiiri Y, Simon M. 1992. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc Natl Acad Sci USA 89:8794-8797
· 6. Pevzner PA, Tang H, Waterman MS. 2001. An Eulerian path approach to DNA fragment assembly. Proc Natl Acad Sci USA 98:9748-9753
· 7. Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. 1999. Improved microbial gene identification with GLIMMER. Nucleic Acids Res 27:4636-4641
· 8. Hensel M, Shea JE, Gleeson C, Jones MD, Dalton E, Holden DW. 1995. Simultaneous identification of bacterial virulence genes by negative selection. Science 269:400-403
· 9. Lockhart DJ, Winzeler EA. 2000. Genomics, gene expression and DNA arrays. Nature 405:827-836; Lucchini S, Thompson A, Hinton JC. 2001. Microarrays for microbiologists. Microbiology 147:1403-1414
· 10. Rainey PB, Preston GM. 2000. In vivo expression technology strategies: valuable tools for biotechnology. Curr Opin Biotechnol 11:440-444
· 11. Washburn MP, Yates JR 3rd. 2000. Analysis of the microbial proteome. Curr Opin Microbiol 3:292-297
· 12. Burley SK, Almo SC, Bonanno JB, Capel M, Chance MR, Gaasterland T, Lin D, Sali A, Studier FW, Swaminathan S. 1999. Structural genomics: beyond the human genome project. Nat Genet 23:151-157
· 13. Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan V, Srinivasan M, Pochart P, et al. 2000. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403:623-627; Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y. 2001. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 98:4569-4574
· 14. The Institute for Genomic Research (http://www.tigr.org/)
· 15. Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM, et al. 1995. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269:496-512.
· 16. GOLD™ database, Integrated Genomics, Inc. (http://wit.integratedgenomics.com/GOLD/); Entrez Microbial Genomes database (http://www.ncbi.nlm.nih.gov/PMGifs/Genomes/micr.html);
· TIGR microbial database (http://www.tigr.org/tdb/mdb/mdbcomplete.html)
· 17. Nelson KE, Paulsen IT, Heidelberg JF, Fraser CM. 2000. Status of genome projects for nonpathogenic bacteria and archaea. Nat Biotechnol 18:1049-1054
· 18. Microbial Genome Program, US Department of Energy (http://www.ornl.gov/microbialgenomes/)
· 19. DOE JGI Microbial Genomics (http://www.jgi.doe.gov/JGI_microbial/html/index.html); Fox JL. 2000. DOE Joint Genome Institute feat: one-day sequencing of E. faecium. ASM News 66:388
· 20. DOE JGI Microbial Genomics (http://www.jgi.doe.gov/JGI_microbial/html/index.html); Fox JL. 2001. Microbial genomics reuniting with microbiology. ASM News 67:247-252
· 21. Ross-Macdonald P, Coelho PS, Roemer T, Agarwal S, Kumar A, Jansen R, Cheung KH, Sheehan A, Symoniatis D, Umansky L, et al. 1999. Large-scale analysis of the yeast genome by transposon tagging and gene disruption. Nature 402:413-418
· 22. Riley M, Serres MH. 2000. Interim report on genomics of Escherichia coli. Annu Rev Microbiol 54:341-411; Mori H, Isono K, Horiuchi T, Miki T. 2000. Functional genomics of Escherichia coli in Japan. Res Microbiol 151:121-128
· 23. Ogasawara N. 2000. Systematic function analysis of Bacillus subtilis genes. Res Microbiol 151:129-134
· 24. DOE Microbial Cell Project (http://microbialcellpr